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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ChIP-seq
16
ATAC-seq
8
DNase-seq
6
MeRIP-seq
2
Capture-C
total RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
RNA microarray
Assay category
28
DNA binding
24
DNA accessibility
Target of assay
28
control
3
histone
3
histone modification
3
nucleotide modification
2
broad histone mark
1
narrow histone mark
Date released
17
May, 2021
12
August, 2017
8
June, 2019
8
October, 2019
6
November, 2020
3
August, 2021
3
December, 2017
2
November, 2019
1
December, 2019
1
February, 2023
1
May, 2019
Available data
34
bam
15
fastq
6
bed bed3+
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
6
bigWig
2
tagAlign
1
tsv
Organism
61
Homo sapiens
Biosample type
30
primary cell
27
cell line
4
in vitro differentiated cells
1
tissue
Organ
202
heart
176
kidney
136
liver
119
pancreas
110
brain
89
connective tissue
85
bone element
68
blood vessel
68
vasculature
63
adipose tissue
62
epithelium
46
artery
23
limb
21
musculature of body
20
lung
14
blood
14
bodily fluid
11
nerve
11
spleen
8
embryo
8
eye
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
HPAP
62
AMP
Genome assembly (visualization)
hg19
208
GRCh38
Lab
56
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
30
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
award.project!
HPAP
assembly!
hg19
BIOSAMPLE
ASSAY
62 results
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ChIP-seq
ATAC-seq
DNase-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
endothelial cell of umbilical vein
5
kidney tubule cell
3
epithelial cell of proximal tubule
2
+ See 6 more…
cell line
EndoC_BH1
2
16
6
2
1
in vitro differentiated cells
Hepatic endoderm
2
hepatocyte
1
pancreatic PP cell
1
tissue
renal glomerulus
1
See all biosamples
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