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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
5
DNase-seq
total RNA-seq
1
ATAC-seq
1
FAIRE-seq
1
Hi-C
Assay category
29
DNA binding
7
DNA accessibility
1
3D chromatin structure
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
4
control
1
RNA binding protein
1
transcription factor
Date released
80
May, 2022
35
September, 2018
33
April, 2018
33
July, 2018
32
October, 2019
29
August, 2017
20
June, 2019
20
May, 2021
19
December, 2017
15
November, 2019
13
February, 2023
8
July, 2019
7
August, 2020
6
August, 2021
6
February, 2021
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
4
March, 2020
3
August, 2018
3
October, 2022
3
September, 2020
1
December, 2019
1
June, 2018
Available data
34
bam
26
bigWig
25
bed narrowPeak
18
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
2
bed bed3+
1
hic
1
tar
Organism
37
Homo sapiens
Biosample type
36
primary cell
1
cell line
Organ
113
brain
97
blood vessel
97
vasculature
72
limb
38
nerve
37
epithelium
31
artery
29
kidney
27
heart
21
vein
20
pancreas
7
eye
7
musculature of body
6
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
37
AMP
Genome assembly (visualization)
28
hg19
24
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
37 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
epithelial cell of proximal tubule
7
kidney epithelial cell
5
Liver fetal (hepatocyte)
1
kidney glomerular epithelial cell
1
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cell line
glomerular visceral epithelial cell
1
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