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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
92
ChIP-seq
72
ATAC-seq
70
single cell RNA-seq
47
WGBS
18
DNase-seq
7
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
92
DNA binding
91
DNA accessibility
70
Transcription
53
DNA methylation
7
3D chromatin structure
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
80
May, 2022
35
September, 2018
33
April, 2018
33
July, 2018
31
October, 2019
29
August, 2017
20
June, 2019
8
July, 2019
7
August, 2020
6
February, 2021
6
November, 2017
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
October, 2022
3
September, 2020
1
June, 2018
1
March, 2020
Available data
202
bam
191
bigWig
157
fastq
106
bed narrowPeak
80
zippedFastqFolder
76
tsv
61
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
tagAlign
3
cool
2
hdf5
1
tar
Organism
313
Homo sapiens
Biosample type
313
primary cell
45
cell line
22
in vitro differentiated cells
13
tissue
Organ
313
epithelium
265
pancreas
35
vasculature
30
kidney
29
blood vessel
29
connective tissue
22
vein
21
brain
13
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
adipose tissue
1
bone element
1
bone marrow
Project
214
AMP
99
HPAP
Genome assembly (visualization)
187
hg19
185
GRCh38
Lab
214
AMP-T2D consortium
99
Klaus Kaestner, Upenn
Audit category:
10
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
assay_title!
total RNA-seq
organ_slims!
ovary
BIOSAMPLE
ASSAY
313 results
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ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic alpha cell
13
35
12
31
1
pancreatic beta cell
13
23
12
16
1
pancreatic acinar cell
8
9
12
1
pancreatic ductal cell
13
4
10
endothelial cell of umbilical vein
17
2
2
1
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