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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
94
ChIP-seq
93
single cell RNA-seq
total RNA-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
94
DNA binding
94
Transcription
77
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
20
control
12
transcription factor
6
RNA binding protein
Date released
92
August, 2021
57
April, 2019
36
February, 2023
35
June, 2019
21
May, 2019
15
July, 2019
14
February, 2021
6
October, 2019
5
March, 2020
Available data
151
bed narrowPeak
142
bam
115
bigWig
96
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
281
Homo sapiens
Biosample type
258
tissue
14
cell line
9
primary cell
Organ
560
liver
388
pancreas
288
epithelium
281
heart
269
brain
205
connective tissue
175
vasculature
169
blood vessel
152
kidney
115
limb
96
bone element
93
adipose tissue
90
musculature of body
85
artery
61
blood
61
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
281
AMP
Genome assembly (visualization)
157
GRCh38
119
hg19
Lab
281
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
281 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
4
1
1
1
coronary artery
5
36
2
heart
14
1
18
1
1
1
heart right ventricle
13
17
1
2
1
1
right cardiac atrium
6
18
1
1
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cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
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