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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
88
ChIP-seq
39
ATAC-seq
30
DNase-seq
total RNA-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
1
small RNA-seq
Assay category
94
Transcription
88
DNA binding
69
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
62
histone
62
histone modification
37
broad histone mark
25
narrow histone mark
18
control
8
transcription factor
6
RNA binding protein
Date released
92
August, 2021
57
April, 2019
36
February, 2023
35
June, 2019
21
May, 2019
15
July, 2019
February, 2021
6
October, 2019
5
March, 2020
Available data
139
bed narrowPeak
128
bam
111
bigWig
96
tsv
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
Organism
267
Homo sapiens
Biosample type
258
tissue
9
primary cell
Organ
599
liver
537
pancreas
387
epithelium
286
kidney
269
brain
267
heart
204
connective tissue
161
vasculature
155
blood vessel
109
limb
93
adipose tissue
90
musculature of body
71
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
5
bone element
5
gonad
5
ovary
4
skeleton
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
267
AMP
Genome assembly (visualization)
145
GRCh38
107
hg19
Lab
267
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_title!
total RNA-seq
month_released!
February, 2021
BIOSAMPLE
ASSAY
267 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
2
3
4
1
1
1
coronary artery
5
36
2
heart
1
14
18
1
1
1
heart right ventricle
17
13
1
2
1
1
right cardiac atrium
18
6
1
1
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primary cell
cardiac fibroblast
5
3
1
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