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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
93
single cell RNA-seq
total RNA-seq
75
ATAC-seq
34
DNase-seq
8
WGBS
7
pCHi-C
3
Hi-C
3
RRBS
1
small RNA-seq
Assay category
109
DNA accessibility
99
DNA binding
94
Transcription
11
DNA methylation
3
3D chromatin structure
Target of assay
65
histone
65
histone modification
37
broad histone mark
28
narrow histone mark
21
control
13
transcription factor
7
RNA binding protein
Date released
92
August, 2021
63
February, 2023
57
April, 2019
42
June, 2019
21
May, 2019
16
July, 2019
14
February, 2021
13
October, 2019
5
March, 2020
Available data
184
bed narrowPeak
149
bam
121
bigWig
100
bigBed narrowPeak
96
tsv
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
9
bed bedMethyl
9
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
323
Homo sapiens
Biosample type
295
tissue
14
cell line
14
primary cell
Organ
602
liver
543
pancreas
393
epithelium
294
kidney
281
heart
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
323
AMP
Genome assembly (visualization)
163
GRCh38
153
hg19
Lab
323
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
323 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
2
3
4
1
1
1
coronary artery
5
36
2
heart
14
1
18
1
1
1
heart right ventricle
13
17
1
2
1
1
right cardiac atrium
6
18
1
1
+ See 12 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
retinal pigment epithelial cell
3
1
1
See all biosamples
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