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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
59
ChIP-seq
36
DNase-seq
8
ATAC-seq
total RNA-seq
4
Hi-C
1
WGBS
Assay category
59
DNA binding
44
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
43
histone
43
histone modification
30
broad histone mark
16
control
13
narrow histone mark
Date released
65
October, 2019
32
June, 2019
May, 2019
6
February, 2021
5
July, 2019
Available data
103
bam
86
bed narrowPeak
81
bigWig
78
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
108
Homo sapiens
Biosample type
108
tissue
Organ
602
liver
541
pancreas
388
epithelium
289
kidney
260
heart
241
brain
210
connective tissue
125
vasculature
119
blood vessel
108
limb
97
bone element
93
adipose tissue
83
musculature of body
80
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
108
AMP
Genome assembly (visualization)
87
GRCh38
86
hg19
Lab
108
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
total RNA-seq
month_released!
May, 2019
BIOSAMPLE
ASSAY
108 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of arm
17
muscle of leg
13
1
gastrocnemius medialis
4
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