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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
DNase-seq
39
ChIP-seq
6
Hi-C
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
53
DNA accessibility
39
DNA binding
6
3D chromatin structure
6
DNA methylation
3
Transcription
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
61
June, 2019
26
August, 2017
8
July, 2019
7
May, 2019
3
March, 2020
2
May, 2022
1
January, 2018
Available data
82
bigWig
78
bed narrowPeak
71
bam
65
bigBed narrowPeak
64
bed broadPeak
52
bed bed3+
51
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
tsv
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
108
Homo sapiens
Biosample type
95
tissue
13
primary cell
Organ
602
liver
543
pancreas
393
epithelium
294
kidney
281
heart
269
brain
210
connective tissue
175
vasculature
169
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
85
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
108
AMP
Genome assembly (visualization)
87
hg19
67
GRCh38
Lab
108
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
108 results
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DNase-seq
ChIP-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
1
1
muscle of leg
13
7
1
muscle of arm
17
renal pelvis
10
gastrocnemius medialis
4
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primary cell
skeletal muscle satellite cell
8
1
skeletal muscle cell
1
2
1
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