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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
46
ATAC-seq
31
ChIP-seq
6
single cell RNA-seq
3
Hi-C
2
WGBS
1
FAIRE-seq
1
RRBS
1
pCHi-C
Assay category
47
DNA accessibility
31
DNA binding
6
Transcription
3
3D chromatin structure
3
DNA methylation
Target of assay
histone
71
histone modification
45
broad histone mark
26
narrow histone mark
22
control
9
transcription factor
5
RNA binding protein
Date released
35
February, 2023
14
February, 2021
14
May, 2019
10
October, 2019
6
August, 2021
5
July, 2019
4
November, 2017
3
March, 2020
Available data
67
bed narrowPeak
56
bam
29
bigWig
17
bigBed narrowPeak
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
7
tsv
6
tagAlign
4
fastq
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hdf5
1
tar
Organism
91
Homo sapiens
Biosample type
67
tissue
14
cell line
10
primary cell
Organ
490
liver
375
pancreas
282
epithelium
194
heart
186
kidney
105
connective tissue
97
bone element
91
vasculature
88
blood vessel
68
blood
68
bodily fluid
61
artery
55
adipose tissue
47
brain
35
eye
30
limb
23
musculature of body
20
lung
18
spleen
12
nerve
12
skeleton
10
embryo
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
91
AMP
Genome assembly (visualization)
56
GRCh38
27
hg19
Lab
91
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
total RNA-seq
target.investigated_as!
histone
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
91 results
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Clear Filters
ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
WGBS
FAIRE-seq
RRBS
pCHi-C
tissue
coronary artery
36
3
aorta
2
4
1
2
1
thoracic aorta
1
5
tibial artery
1
5
ascending aorta
4
+ See 1 more…
cell line
smooth muscle cell of the coronary artery
8
6
primary cell
endothelial cell of umbilical vein
2
2
1
choroid plexus epithelial cell
2
1
brain microvascular endothelial cell
2
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