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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
450
ChIP-seq
total RNA-seq
23
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
450
DNA binding
29
DNA accessibility
7
DNA methylation
4
3D chromatin structure
4
Transcription
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
300
November, 2017
53
November, 2018
46
December, 2017
24
May, 2020
22
August, 2017
20
August, 2021
20
May, 2022
6
July, 2019
3
February, 2021
2
June, 2019
2
March, 2020
1
December, 2018
1
October, 2019
Available data
443
bam
416
fastq
381
bigWig
361
bed narrowPeak
323
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
28
tagAlign
10
bed bed3+
5
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
500
Homo sapiens
Biosample type
369
cell line
122
tissue
6
primary cell
3
in vitro differentiated cells
Organ
500
liver
392
pancreas
300
epithelium
264
kidney
224
heart
132
connective tissue
104
vasculature
99
blood vessel
97
bone element
82
brain
68
blood
68
bodily fluid
66
limb
65
artery
61
adipose tissue
57
musculature of body
39
eye
20
lung
19
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
7
vein
2
intestine
2
thymus
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
500
AMP
Genome assembly (visualization)
384
hg19
303
GRCh38
Lab
461
AMP-T2D consortium
20
Karen Mohlke, UNC
19
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
15
inconsistent control read length
8
inconsistent control run_type
assay_title!
total RNA-seq
target.investigated_as!
histone
organ_slims!
adrenal gland
BIOSAMPLE
ASSAY
500 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
360
1
1
2
2
2
1
tissue
liver
81
20
2
3
1
1
1
1
1
right lobe of liver
5
1
2
1
2
primary cell
hepatocyte
1
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
3
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