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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
14
ChIP-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
14
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
8
control
histone
6
histone modification
6
transcription factor
4
broad histone mark
3
other context
3
other post-translational modification
2
narrow histone mark
Date released
9
November, 2018
7
December, 2018
1
January, 2019
1
March, 2020
1
October, 2017
Available data
18
bam
18
fastq
10
bigWig
8
bed narrowPeak
7
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
19
Homo sapiens
Biosample type
19
tissue
Organ
500
liver
392
pancreas
300
epithelium
264
kidney
219
heart
132
connective tissue
104
vasculature
99
blood vessel
97
bone element
82
brain
68
blood
68
bodily fluid
66
limb
65
artery
61
adipose tissue
57
musculature of body
39
eye
20
lung
19
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
19
AMP
Genome assembly (visualization)
10
GRCh38
8
hg19
Lab
19
AMP-T2D consortium
assay_title!
total RNA-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
19 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
pCHi-C
tissue
spleen
14
2
1
1
1
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