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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
24
ChIP-seq
total RNA-seq
2
WGBS
1
ATAC-seq
1
DNase-seq
1
GRO-seq
1
pCHi-C
Assay category
24
DNA binding
2
DNA accessibility
2
DNA methylation
Target of assay
histone
18
histone modification
15
control
10
narrow histone mark
9
transcription factor
8
broad histone mark
3
other context
3
other post-translational modification
Date released
9
November, 2018
7
December, 2017
7
December, 2018
3
February, 2018
1
January, 2018
1
January, 2019
1
March, 2020
1
October, 2017
Available data
29
fastq
28
bam
14
bigWig
11
bed narrowPeak
7
bigBed narrowPeak
2
bed bed3+
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
30
Homo sapiens
Biosample type
19
tissue
11
in vitro differentiated cells
Organ
500
liver
392
pancreas
300
epithelium
264
kidney
224
heart
132
connective tissue
104
vasculature
99
blood vessel
97
bone element
82
brain
68
blood
68
bodily fluid
66
limb
65
artery
61
adipose tissue
57
musculature of body
39
eye
20
lung
19
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
30
AMP
Genome assembly (visualization)
14
GRCh38
12
hg19
1
hg18
Lab
30
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
inconsistent control read length
assay_title!
total RNA-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
30 results
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ChIP-seq
WGBS
ATAC-seq
DNase-seq
GRO-seq
pCHi-C
tissue
spleen
14
2
1
1
1
in vitro differentiated cells
pancreatic endoderm
8
1
Hepatic endoderm
2
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