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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
total RNA-seq
51
ChIP-seq
48
ATAC-seq
31
DNase-seq
10
WGBS
4
pCHi-C
3
Hi-C
2
RRBS
1
small RNA-seq
Assay category
94
Transcription
79
DNA accessibility
51
DNA binding
12
DNA methylation
3
3D chromatin structure
Target of assay
histone
103
histone modification
61
broad histone mark
42
narrow histone mark
28
control
23
transcription factor
11
RNA binding protein
3
other context
3
other post-translational modification
Date released
92
August, 2021
36
February, 2023
33
June, 2019
15
April, 2019
15
July, 2019
14
February, 2021
9
November, 2018
8
May, 2019
7
December, 2018
6
March, 2020
5
May, 2024
1
January, 2019
1
October, 2017
1
October, 2019
Available data
102
bed narrowPeak
99
bam
97
tsv
68
bigWig
45
bigBed narrowPeak
31
bed bed3+
31
bed broadPeak
31
bigBed broadPeak
18
fastq
10
bed bedMethyl
10
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
243
Homo sapiens
Biosample type
222
tissue
14
cell line
7
primary cell
Organ
500
liver
392
pancreas
300
epithelium
264
kidney
224
heart
132
connective tissue
104
vasculature
99
blood vessel
97
bone element
82
brain
68
blood
68
bodily fluid
66
limb
65
artery
61
adipose tissue
57
musculature of body
39
eye
20
lung
19
spleen
18
ureter
14
nerve
12
skeleton
11
embryo
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
243
AMP
Genome assembly (visualization)
111
GRCh38
65
hg19
Lab
238
AMP-T2D consortium
5
Patrick T. Ellinor, Broad
Audit category:
4
inconsistent ontology term
assay_title!
total RNA-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
243 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
coronary artery
3
36
2
heart left ventricle
18
11
2
3
4
1
1
1
heart
1
2
18
1
1
1
heart right ventricle
17
2
1
2
1
1
left cardiac atrium
18
5
1
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cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
3
3
1
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