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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
83
ChIP-seq
42
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
1
DNase-seq
Assay category
83
DNA binding
43
DNA accessibility
4
3D chromatin structure
2
Transcription
Target of assay
100
histone
histone modification
50
narrow histone mark
49
broad histone mark
47
transcription factor
36
control
9
RNA binding protein
2
chromatin remodeller
Date released
31
August, 2017
27
May, 2021
21
August, 2021
16
December, 2017
12
February, 2023
8
February, 2018
6
March, 2020
6
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
2
December, 2019
1
August, 2018
Available data
82
bam
58
fastq
52
bed narrowPeak
52
bigWig
17
bed bed3+
14
tagAlign
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
4
tsv
3
bigBed narrowPeak
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
143
Homo sapiens
Biosample type
997
tissue
598
primary cell
143
in vitro differentiated cells
142
cell line
8
stem cell
Organ
51
connective tissue
11
embryo
7
epithelium
liver
2
pancreas
1
adipose tissue
Project
143
AMP
Genome assembly (visualization)
91
hg19
58
GRCh38
4
hg18
Lab
114
AMP-T2D consortium
22
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
24
inconsistent ontology term
2
audit script error
Audit category:
5
missing controlled_by
Audit category:
10
inconsistent control read length
assay_title!
total RNA-seq
target.investigated_as!
histone modification
organ_slims!
liver
BIOSAMPLE
ASSAY
143 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
30
8
1
1
embryonic stem cell
18
6
1
neural progenitor cell
7
10
pancreatic endoderm
8
1
cardiomyocytes (cardiac muscle cell)
1
2
2
2
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