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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
50
ChIP-seq
8
snATAC-seq
1
ATAC-seq
Assay category
50
DNA binding
9
DNA accessibility
Target of assay
51
transcription factor
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
25
December, 2018
13
November, 2018
12
January, 2019
8
January, 2021
1
January, 2018
Available data
50
bam
50
fastq
45
bigWig
44
bed narrowPeak
44
bigBed narrowPeak
Organism
59
Homo sapiens
Biosample type
51
cell line
8
primary cell
Organ
542
liver
534
pancreas
385
epithelium
310
heart
291
kidney
266
brain
200
connective tissue
170
vasculature
165
blood vessel
115
limb
97
bone element
90
musculature of body
88
adipose tissue
84
artery
59
blood
59
bodily fluid
41
eye
38
nerve
23
embryo
22
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
51
AMP
8
T1D
Genome assembly (visualization)
45
hg19
44
GRCh38
Lab
51
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_title!
total RNA-seq
target.investigated_as!
other post-translational modification
RNA binding protein
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
50
1
primary cell
peripheral blood mononuclear cell
8
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