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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1769
ChIP-seq
1329
total RNA-seq
413
ATAC-seq
248
single cell RNA-seq
208
DNase-seq
78
snATAC-seq
75
WGBS
48
pCHi-C
26
Hi-C
19
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
2
RNA microarray
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
248
Transcription
Target of assay
3
control
Date released
August, 2021
47
September, 2023
43
April, 2018
42
July, 2018
40
September, 2020
34
May, 2022
18
February, 2021
9
April, 2020
3
August, 2018
3
July, 2019
3
May, 2023
2
June, 2018
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
121
fastq
98
tsv
93
bam
93
bigWig
52
zippedFastqFolder
8
csv
5
txt
Organism
248
Homo sapiens
Biosample type
180
primary cell
68
tissue
Organ
69
epithelium
69
pancreas
56
kidney
9
lung
4
connective tissue
3
brain
1
heart
1
liver
1
musculature of body
Project
107
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
93
GRCh38
93
hg19
Lab
104
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
9
Xin Sun, UCSD
3
Katalin Susztak, Upenn
Audit category:
inconsistent ontology term
7
audit script error
assay_title!
whole genome sequencing assay
month_released!
August, 2021
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
248 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic acinar cell
11
pancreatic delta cell
11
+ See 11 more…
tissue
kidney
56
lung
9
heart
1
liver
1
skeletal muscle tissue
1
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