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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
174
ChIP-seq
129
total RNA-seq
30
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
single cell RNA-seq
1
DNase-seq
Assay category
174
DNA binding
131
Transcription
31
DNA accessibility
4
3D chromatin structure
Target of assay
98
histone
98
histone modification
49
broad histone mark
49
transcription factor
48
narrow histone mark
30
control
11
RNA binding protein
chromatin remodeller
Date released
132
May, 2021
66
August, 2017
August, 2021
42
December, 2017
39
February, 2018
26
February, 2021
16
February, 2023
8
March, 2020
8
October, 2019
5
November, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
251
bam
234
bigWig
138
fastq
124
tsv
104
bed narrowPeak
23
bed bed3+
20
tagAlign
16
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
349
Homo sapiens
Biosample type
2546
tissue
1083
primary cell
588
cell line
349
in vitro differentiated cells
10
stem cell
Organ
91
connective tissue
29
embryo
23
epithelium
14
liver
3
pancreas
1
adipose tissue
1
heart
Project
349
AMP
Genome assembly (visualization)
261
hg19
232
GRCh38
4
hg18
Lab
299
AMP-T2D consortium
47
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
115
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
Audit category:
15
inconsistent control read length
assay_title!
whole genome sequencing assay
month_released!
August, 2021
target.investigated_as!
chromatin remodeller
BIOSAMPLE
ASSAY
349 results
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ChIP-seq
total RNA-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
single cell RNA-seq
DNase-seq
in vitro differentiated cells
adipocyte
65
5
7
1
cardiomyocytes
3
59
embryonic stem cell
40
7
6
1
pancreatic endoderm
18
4
1
cardiac precursors (cardiac muscle cell)
19
1
1
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