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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
total RNA-seq
85
single cell RNA-seq
52
ATAC-seq
48
snATAC-seq
47
WGBS
3
Hi-C
Assay category
177
Transcription
100
DNA accessibility
47
DNA methylation
3
3D chromatin structure
Date released
134
May, 2022
79
February, 2023
59
September, 2020
45
February, 2021
7
August, 2020
August, 2021
3
October, 2022
Available data
169
fastq
153
zippedFastqFolder
13
bigWig
6
tsv
3
bed bedgraph
3
bedpe bed3+
3
cool
3
hic
3
txt
2
bed narrowPeak
Organism
327
Homo sapiens
Biosample type
324
primary cell
3
in vitro differentiated cells
Organ
152
epithelium
152
pancreas
Project
324
HPAP
3
AMP
Genome assembly (visualization)
10
GRCh38
6
hg19
Lab
3761
AMP-T2D consortium
343
Kyle Gaulton, UCSD
324
Klaus Kaestner, Upenn
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
14
Katalin Susztak, Upenn
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Anna Gloyn, Oxford
3
Struan F.A. Grant, CHOP
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
ITG
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
audit script error
1
inconsistent ontology term
assay_title!
whole genome sequencing assay
month_released!
August, 2021
BIOSAMPLE
ASSAY
327 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
snATAC-seq
WGBS
Hi-C
primary cell
Langerhans cell
85
48
pancreatic alpha cell
42
29
31
1
pancreatic beta cell
11
16
16
1
exocrine cell
39
pancreatic acinar cell
4
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
embryonic stem cell
1
neuron cell of Hypothalamus (neuron)
1
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