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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
510
ChIP-seq
189
total RNA-seq
22
ATAC-seq
6
DNase-seq
5
WGBS
4
Hi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
2
pCHi-C
whole genome sequencing assay
Assay category
510
DNA binding
192
Transcription
28
DNA accessibility
7
DNA methylation
4
3D chromatin structure
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
307
November, 2017
194
May, 2020
53
December, 2017
53
November, 2018
40
May, 2022
35
August, 2017
32
August, 2021
10
July, 2019
5
December, 2019
5
January, 2019
4
October, 2019
February, 2021
3
March, 2020
2
June, 2019
1
December, 2018
1
February, 2020
Available data
651
bam
592
bigWig
440
fastq
411
bed narrowPeak
337
bigBed narrowPeak
174
tsv
68
tagAlign
55
bed broadPeak
55
bigBed broadPeak
11
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
hdf5
Organism
745
Homo sapiens
Biosample type
389
cell line
335
tissue
13
primary cell
8
in vitro differentiated cells
Organ
836
pancreas
745
liver
448
epithelium
331
kidney
270
heart
216
brain
185
connective tissue
125
vasculature
119
blood vessel
85
adipose tissue
82
limb
76
musculature of body
69
blood
69
bodily fluid
61
artery
61
eye
33
embryo
27
nerve
21
spleen
20
lung
18
ureter
13
vein
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
745
AMP
Genome assembly (visualization)
593
hg19
502
GRCh38
Lab
676
AMP-T2D consortium
40
Karen Mohlke, UNC
29
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
assay_title!
whole genome sequencing assay
month_released!
February, 2021
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
745 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
small RNA-seq
RRBS
STARR-seq
pCHi-C
cell line
HepG2
369
14
1
2
2
1
tissue
liver
123
167
20
2
3
1
1
1
1
right lobe of liver
7
3
1
2
1
2
primary cell
hepatocyte
3
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
in vitro differentiated cells
hepatocyte
8
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