Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
502
ChIP-seq
263
single cell RNA-seq
257
ATAC-seq
234
total RNA-seq
87
RNA microarray
83
snATAC-seq
75
WGBS
49
pCHi-C
24
DNase-seq
10
MeRIP-seq
7
Hi-C
5
GRO-seq
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
2
RRBS
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
whole genome sequencing assay
Assay category
24
DNA accessibility
Date released
23
June, 2019
October, 2019
1
August, 2017
Available data
23
bam
23
bed bed3+
23
bed broadPeak
23
bed narrowPeak
23
bigBed broadPeak
23
bigBed narrowPeak
23
bigWig
Organism
24
Homo sapiens
Biosample type
17
tissue
7
primary cell
Organ
10
brain
7
kidney
6
epithelium
3
heart
2
pancreas
1
blood vessel
1
connective tissue
1
liver
1
vasculature
Project
24
AMP
Genome assembly (visualization)
199
GRCh38
hg19
Lab
24
AMP-T2D consortium
assay_title!
whole genome sequencing assay
month_released!
October, 2019
assembly!
hg19
BIOSAMPLE
ASSAY
24 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
tissue
body of pancreas
2
heart
2
Ammon's horn
1
caudate nucleus
1
cerebellar cortex
1
+ See 10 more…
primary cell
glomerular visceral epithelial cell
2
kidney tubule cell
2
cardiac fibroblast
1
kidney capillary endothelial cell
1
kidney glomerular epithelial cell
1
See all biosamples
Download