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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1414
total RNA-seq
1333
ChIP-seq
504
ATAC-seq
363
single cell RNA-seq
197
DNase-seq
87
RNA microarray
84
snATAC-seq
66
WGBS
53
pCHi-C
29
Hi-C
18
small RNA-seq
15
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
FAIRE-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
whole genome sequencing assay
Assay category
197
DNA accessibility
Date released
187
June, 2019
October, 2019
9
November, 2018
August, 2017
1
November, 2020
Available data
197
bam
197
bed bed3+
197
bed broadPeak
197
bed narrowPeak
197
bigBed broadPeak
197
bigBed narrowPeak
197
bigWig
9
fastq
Organism
197
Homo sapiens
Biosample type
172
tissue
25
primary cell
Organ
78
kidney
33
musculature of body
32
brain
32
limb
30
heart
18
ureter
14
epithelium
8
connective tissue
7
vasculature
6
pancreas
5
blood vessel
5
liver
4
eye
2
adipose tissue
2
artery
1
spleen
Project
197
AMP
Genome assembly (visualization)
197
GRCh38
174
hg19
Lab
197
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
assay_title!
whole genome sequencing assay
month_released!
October, 2019
August, 2017
BIOSAMPLE
ASSAY
197 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
+ See 16 more…
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