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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1524
ChIP-seq
1375
total RNA-seq
407
ATAC-seq
293
single cell RNA-seq
188
DNase-seq
86
RNA microarray
84
snATAC-seq
53
pCHi-C
28
WGBS
22
Hi-C
18
small RNA-seq
15
RRBS
5
GRO-seq
5
STARR-seq
4
FAIRE-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
whole genome sequencing assay
Assay category
188
DNA accessibility
Date released
173
June, 2019
9
November, 2018
5
August, 2017
October, 2019
1
November, 2020
Available data
187
bam
187
bed narrowPeak
187
bigBed narrowPeak
187
bigWig
185
bed broadPeak
185
bigBed broadPeak
183
bed bed3+
12
fastq
Organism
188
Homo sapiens
Biosample type
174
tissue
13
primary cell
1
in vitro differentiated cells
Organ
78
kidney
33
musculature of body
32
brain
32
limb
30
heart
18
ureter
epithelium
9
connective tissue
7
pancreas
7
vasculature
6
liver
5
blood vessel
4
eye
2
adipose tissue
2
artery
1
spleen
Project
188
AMP
Genome assembly (visualization)
185
GRCh38
170
hg19
Lab
188
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
whole genome sequencing assay
month_released!
October, 2019
organ_slims!
epithelium
BIOSAMPLE
ASSAY
188 results
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DNase-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 38 more…
primary cell
cardiac fibroblast
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain pericyte
1
+ See 5 more…
in vitro differentiated cells
adipocyte
1
See all biosamples
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