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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
27
ATAC-seq
5
total RNA-seq
4
DNase-seq
2
ChIP-seq
1
RRBS
Assay category
31
DNA accessibility
5
Transcription
2
DNA binding
1
DNA methylation
Target of assay
RNA binding protein
1
control
1
histone
1
histone modification
1
narrow histone mark
1
transcription factor
Date released
31
February, 2023
October, 2019
6
June, 2019
1
February, 2020
1
July, 2019
Available data
32
bed narrowPeak
6
bam
5
bigBed narrowPeak
5
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
39
Homo sapiens
Biosample type
35
tissue
4
primary cell
Organ
919
pancreas
725
liver
670
connective tissue
485
adipose tissue
481
epithelium
374
heart
321
kidney
197
brain
184
vasculature
179
blood vessel
159
bone element
114
artery
96
musculature of body
59
blood
59
bodily fluid
53
limb
39
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
39
AMP
Genome assembly (visualization)
33
hg19
5
GRCh38
Lab
39
AMP-T2D consortium
assay_title!
whole genome sequencing assay
month_released!
October, 2019
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
39 results
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ATAC-seq
total RNA-seq
DNase-seq
ChIP-seq
RRBS
tissue
retina
15
3
3
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
2
1
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