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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
218
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
2
pCHi-C
FAIRE-seq
Assay category
218
DNA binding
36
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
3
RNA binding protein
3
transcription factor
Date released
91
November, 2017
86
October, 2019
30
June, 2019
28
May, 2019
17
July, 2019
16
October, 2017
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
242
bam
221
bigWig
202
bed narrowPeak
126
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
21
fastq
14
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
273
Homo sapiens
Biosample type
252
tissue
21
primary cell
Organ
943
pancreas
789
liver
682
connective tissue
523
epithelium
489
adipose tissue
390
heart
353
kidney
273
brain
232
vasculature
226
blood vessel
159
bone element
139
artery
119
limb
94
musculature of body
69
blood
69
bodily fluid
60
eye
42
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
273
AMP
Genome assembly (visualization)
217
GRCh38
163
hg19
Lab
273
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
4
missing controlled_by
assay_title!
whole genome sequencing assay
FAIRE-seq
month_released!
February, 2020
BIOSAMPLE
ASSAY
273 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
pCHi-C
tissue
brain
20
14
1
1
1
layer of hippocampus
23
temporal lobe
15
1
1
caudate nucleus
15
1
substantia nigra
16
+ See 75 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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