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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 1831ChIP-seq
  • 1439total RNA-seq
  • 417ATAC-seq
  • 312single cell RNA-seq
  • 212DNase-seq
  • 87RNA microarray
  • 82snATAC-seq
  • 75WGBS
  • 57pCHi-C
  • 33Hi-C
  • 21RRBS
  • 18small RNA-seq
  • 10MeRIP-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3snDrop-seq
  • 1DNAme array
  • 1MPRA
  • 1whole genome sequencing assay
Assay category
  • 417DNA accessibility
Date released
  • 100May, 2020
  • 77May, 2022
  • 76August, 2021
  • 34May, 2021
  • 26November, 2019
  • 22February, 2021
  • 22October, 2019
  • 14September, 2018
  • 8October, 2017
  • 7August, 2020
  • 6July, 2019
  • 5August, 2017
  • 5September, 2017
  • 4March, 2019
  • 4March, 2020
  • 3January, 2018
  • 3September, 2020
  • 1November, 2020
Available data
  • 213bed narrowPeak
  • 175bam
  • 133bigWig
  • 64xls
  • 61fastq
  • 39zippedFastqFolder
  • 27bigBed narrowPeak
  • 4bed bedgraph
  • 2bed bed3
  • 2bed broadPeak
  • 2tsv
Organism
  • 417Homo sapiens
Biosample type
  • 188primary cell
  • 170tissue
  • 30in vitro differentiated cells
  • 29cell line
Organ
  • 141pancreas
  • 91epithelium
  • 64kidney
  • 23liver
  • 15connective tissue
  • 12heart
  • 11blood vessel
  • 11vasculature
  • 10artery
  • 8bone element
  • 8limb
  • 8skeleton
  • 5adipose tissue
  • 3brain
  • 1blood
  • 1bodily fluid
  • 1eye
  • 1musculature of body
  • 1nerve
  • 1pituitary gland
  • 1skin of body
  • 1spleen
Project
  • 368AMP
  • 49HPAP
Genome assembly (visualization)
  • 216hg19
  • 188GRCh38
Lab
  • 254AMP-T2D consortium
  • 64Katalin Susztak, Upenn
  • 49Klaus Kaestner, Upenn
  • 23Kyle Gaulton, UCSD
  • 20Karen Mohlke, UNC
  • 2Mark McCarthy, Oxford
  • 2Struan F.A. Grant, CHOP
  • 1Bing Ren, UCSD
  • 1Maike Sander, UCSD
  • 1Stephen Parker, UMich
Audit category:
  • 33inconsistent ontology term
  • 1inconsistent replicate
BIOSAMPLE
ASSAY

417 results

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Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell35
pancreatic beta cell23
CD4-positive, alpha-beta memory T cell22
naive thymus-derived CD4-positive, alpha-beta T cell22
monocyte15
tissue
kidney64
islet of Langerhans57
liver20
body of pancreas4
adipose tissue2
in vitro differentiated cells
neural progenitor cell10
adipocyte7
Pancreatic progenitors (progenitor cell of endocrine pancreas)5
embryonic stem cell5
cardiac precursors (cardiac muscle cell)1
cell line
EndoC_BH119
smooth muscle cell of the coronary artery8
GM128781
HepG21
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