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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
531
ATAC-seq
212
DNase-seq
84
snATAC-seq
5
FAIRE-seq
Assay category
743
DNA accessibility
Date released
187
June, 2019
103
February, 2023
100
May, 2020
77
May, 2022
76
August, 2021
34
May, 2021
32
October, 2019
26
November, 2019
22
February, 2021
14
September, 2018
11
May, 2023
10
August, 2017
9
November, 2018
8
October, 2017
7
August, 2020
6
July, 2019
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
November, 2020
Available data
487
bed narrowPeak
384
bam
345
bigWig
236
bigBed narrowPeak
208
bed bed3+
208
bed broadPeak
206
bigBed broadPeak
73
fastq
64
xls
39
zippedFastqFolder
14
tsv
12
bed bed3
7
bed bedgraph
3
txt
Organism
743
Homo sapiens
Biosample type
438
tissue
231
primary cell
43
in vitro differentiated cells
31
cell line
Organ
160
pancreas
156
kidney
122
epithelium
77
heart
57
vasculature
55
blood vessel
49
artery
44
limb
36
brain
34
connective tissue
34
musculature of body
32
eye
29
liver
18
ureter
12
bone element
12
skeleton
8
adipose tissue
3
nerve
2
spleen
2
vein
1
blood
1
bodily fluid
1
pituitary gland
1
skin of body
Project
683
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
447
hg19
441
GRCh38
Lab
555
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
46
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
743 results
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Clear Filters
ATAC-seq
DNase-seq
tissue
kidney
75
13
islet of Langerhans
68
1
coronary artery
36
2
liver
20
2
heart
18
+ See 59 more…
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
+ See 56 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
1
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
Panc1
1
+ See 1 more…
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