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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
76
ATAC-seq
74
total RNA-seq
43
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
76
DNA accessibility
43
DNA binding
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
301
August, 2017
264
October, 2019
199
May, 2021
150
May, 2020
120
May, 2019
119
August, 2021
103
February, 2023
94
December, 2017
80
April, 2019
77
May, 2022
74
October, 2018
70
November, 2018
46
September, 2018
40
May, 2024
39
November, 2019
34
December, 2018
31
June, 2019
30
February, 2021
25
January, 2019
24
February, 2018
23
October, 2017
11
May, 2023
11
September, 2017
7
August, 2020
7
March, 2020
6
July, 2019
4
March, 2019
3
January, 2018
3
September, 2020
1
November, 2020
Available data
106
bed narrowPeak
64
xls
34
bam
32
bigWig
24
tagAlign
3
bed bed3+
Organism
119
Homo sapiens
Biosample type
64
tissue
33
in vitro differentiated cells
18
cell line
4
primary cell
Organ
64
kidney
22
liver
4
epithelium
2
connective tissue
Project
119
AMP
Genome assembly (visualization)
90
GRCh38
41
hg19
Lab
64
Katalin Susztak, Upenn
35
AMP-T2D consortium
18
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
assay_title!
CRISPR genome editing followed by DNA sequencing
BIOSAMPLE
ASSAY
119 results
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Clear Filters
ATAC-seq
ChIP-seq
tissue
kidney
64
in vitro differentiated cells
neural progenitor cell
10
21
adipocyte
1
osteoblast
1
cell line
HepG2
18
primary cell
hepatocyte
4
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