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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
867
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
438
DNA accessibility
Date released
163
June, 2019
79
February, 2023
64
August, 2021
38
May, 2022
20
November, 2019
20
October, 2019
11
May, 2023
9
November, 2018
8
February, 2021
8
October, 2017
6
July, 2019
4
August, 2017
4
March, 2019
2
January, 2018
2
March, 2020
Available data
385
bed narrowPeak
241
bam
220
bigWig
180
bigBed narrowPeak
178
bed broadPeak
176
bed bed3+
176
bigBed broadPeak
64
xls
39
fastq
5
bed bed3
1
tsv
Organism
438
Homo sapiens
Biosample type
438
tissue
231
primary cell
43
in vitro differentiated cells
31
cell line
Organ
143
kidney
69
pancreas
66
heart
44
limb
43
blood vessel
43
vasculature
41
artery
33
musculature of body
31
brain
31
eye
25
liver
18
ureter
12
bone element
12
epithelium
12
skeleton
8
adipose tissue
8
connective tissue
3
nerve
2
spleen
1
pituitary gland
1
skin of body
Project
427
AMP
11
T1D
Genome assembly (visualization)
335
GRCh38
283
hg19
Lab
309
AMP-T2D consortium
75
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
438 results
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ATAC-seq
DNase-seq
tissue
kidney
75
13
islet of Langerhans
68
1
coronary artery
36
2
liver
20
2
heart
18
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