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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
247
total RNA-seq
200
ATAC-seq
187
single cell RNA-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
201
DNA accessibility
Date released
100
May, 2020
39
May, 2022
14
September, 2018
13
May, 2021
12
February, 2023
7
August, 2020
5
September, 2017
3
August, 2017
3
October, 2019
3
September, 2020
1
February, 2021
1
November, 2020
Available data
85
bam
79
bigWig
40
bed narrowPeak
39
zippedFastqFolder
32
fastq
23
bigBed narrowPeak
12
tsv
1
bed bed3
1
tar
Organism
201
Homo sapiens
Biosample type
264
tissue
201
primary cell
42
in vitro differentiated cells
29
cell line
Organ
73
epithelium
71
pancreas
2
connective tissue
1
blood vessel
1
liver
1
vasculature
1
vein
Project
152
AMP
49
HPAP
Genome assembly (visualization)
85
hg19
49
GRCh38
Lab
152
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
12
inconsistent ontology term
BIOSAMPLE
ASSAY
201 results
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Clear Filters
ATAC-seq
FAIRE-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
pancreatic acinar cell
9
pancreatic ductal cell
4
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
T-helper 17 cell
2
T-helper 2 cell
2
central memory CD8-positive, alpha-beta T cell
2
effector CD4-positive, alpha-beta T cell
2
effector T cell
2
effector memory CD8-positive, alpha-beta T cell
2
gamma-delta T cell
2
mature natural killer cell
2
memory B cell
2
memory T cell
2
memory regulatory T cell
2
naive B cel
2
naive regulatory T cell
2
naive thymus-derived CD8-positive, alpha-beta T cell
2
osteoblast
2
regulatory T cell
2
Heart fetal (cardiac muscle cell)
1
Liver fetal (hepatocyte)
1
endothelial cell of umbilical vein
1
immature natural killer cell
1
myeloid dendritic cell
1
natural killer cell
1
plasma cell
1
plasmacytoid dendritic cell
1
See all biosamples
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