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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
99
total RNA-seq
28
ATAC-seq
6
MeRIP-seq
4
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
3
STARR-seq
2
Capture-C
2
DNase-seq
2
Hi-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
28
DNA accessibility
Target of assay
3
control
3
nucleotide modification
Date released
16
May, 2021
8
February, 2021
6
November, 2020
2
March, 2020
1
January, 2018
1
November, 2019
Available data
9
bam
9
bed narrowPeak
3
bigWig
1
tsv
Organism
34
Homo sapiens
Biosample type
243
tissue
199
primary cell
42
in vitro differentiated cells
34
cell line
Organ
25
epithelium
25
pancreas
8
artery
8
blood vessel
8
heart
8
vasculature
1
blood
1
bodily fluid
liver
Project
34
AMP
Genome assembly (visualization)
12
hg19
9
GRCh38
Lab
28
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
25
inconsistent ontology term
organ_slims!
liver
BIOSAMPLE
ASSAY
34 results
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ATAC-seq
MeRIP-seq
cell line
EndoC_BH1
19
6
smooth muscle cell of the coronary artery
8
GM12878
1
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