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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
531
DNA accessibility
21
DNA methylation
Date released
106
February, 2021
103
February, 2023
100
May, 2020
77
August, 2021
77
May, 2022
34
May, 2021
26
November, 2019
22
October, 2019
21
July, 2019
14
September, 2018
11
August, 2017
11
May, 2023
8
October, 2017
7
August, 2020
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
December, 2019
1
November, 2020
Available data
278
bed narrowPeak
175
bam
136
bigWig
87
txt
65
fastq
64
xls
39
zippedFastqFolder
27
bigBed narrowPeak
19
bed bedMethyl
19
bigBed bedMethyl
16
tsv
12
bed bed3
7
bed bedgraph
4
bed bed3+
2
bed broadPeak
Organism
638
Homo sapiens
Biosample type
358
tissue
210
primary cell
42
in vitro differentiated cells
29
cell line
Organ
154
pancreas
110
epithelium
96
bone element
81
kidney
49
heart
47
vasculature
46
blood vessel
45
artery
29
eye
27
connective tissue
25
liver
12
skeleton
8
limb
7
adipose tissue
6
brain
6
musculature of body
1
blood
1
bodily fluid
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
spleen
Project
579
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
280
hg19
234
GRCh38
Lab
451
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
128
inconsistent ontology term
2
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
639 results
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Clear Filters
ATAC-seq
RNA microarray
RRBS
tissue
bone element
84
kidney
75
1
islet of Langerhans
68
1
coronary artery
36
liver
20
1
+ See 34 more…
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
+ See 44 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
See all biosamples
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