Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ATAC-seq
71
ChIP-seq
27
Hi-C
19
RRBS
3
pCHi-C
3
total RNA-seq
2
Capture-C
1
snATAC-seq
Assay category
89
DNA accessibility
Date released
45
February, 2023
20
May, 2022
5
May, 2021
4
February, 2021
4
March, 2020
3
January, 2018
3
October, 2019
2
August, 2021
2
March, 2019
1
October, 2017
Available data
179
bed narrowPeak
bam
124
bigWig
49
fastq
27
bigBed narrowPeak
12
bed bed3
7
bed bedgraph
4
bed bed3+
3
txt
2
tsv
1
bed broadPeak
Organism
89
Homo sapiens
Biosample type
61
tissue
25
in vitro differentiated cells
3
cell line
Organ
27
eye
20
connective tissue
20
liver
14
epithelium
7
pancreas
4
bone element
4
skeleton
3
adipose tissue
1
blood
1
bodily fluid
1
brain
1
musculature of body
Project
89
AMP
Genome assembly (visualization)
123
GRCh38
89
hg19
Lab
56
AMP-T2D consortium
20
Karen Mohlke, UNC
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
5
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
89 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
tissue
liver
20
retina
15
pigmented layer of retina
12
islet of Langerhans
5
adipose tissue
3
+ See 6 more…
in vitro differentiated cells
adipocyte
8
embryonic stem cell
6
chondrocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 3 more…
cell line
EndoC_BH1
2
GM12878
1
See all biosamples
Download