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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
128
ATAC-seq
93
total RNA-seq
88
ChIP-seq
11
single cell RNA-seq
10
MeRIP-seq
6
snATAC-seq
5
STARR-seq
4
Hi-C
2
Capture-C
1
whole genome sequencing assay
Assay category
128
DNA accessibility
Date released
66
August, 2021
38
May, 2022
11
May, 2023
5
May, 2021
4
March, 2019
3
February, 2023
1
October, 2017
Available data
106
bed narrowPeak
64
xls
31
bigWig
20
fastq
19
bam
3
bed bedgraph
3
txt
2
bed broadPeak
Organism
128
Homo sapiens
Biosample type
118
tissue
10
in vitro differentiated cells
Organ
75
kidney
23
pancreas
20
liver
2
connective tissue
Project
128
AMP
49
HPAP
11
T1D
Genome assembly (visualization)
78
GRCh38
51
hg19
Lab
AMP-T2D consortium
75
Katalin Susztak, Upenn
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
128 results
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ATAC-seq
tissue
kidney
75
islet of Langerhans
23
liver
20
in vitro differentiated cells
embryonic stem cell
6
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
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