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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
478
ChIP-seq
61
total RNA-seq
21
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
21
DNA accessibility
Date released
16
May, 2021
2
March, 2020
1
February, 2021
1
January, 2018
1
November, 2019
Available data
3
bigWig
2
bam
2
bed narrowPeak
1
bed bed3
1
tsv
Organism
21
Homo sapiens
Biosample type
222
tissue
200
primary cell
42
in vitro differentiated cells
21
cell line
Organ
19
epithelium
19
pancreas
8
artery
8
blood vessel
8
heart
vasculature
1
blood
1
bodily fluid
1
liver
Project
21
AMP
Genome assembly (visualization)
5
hg19
2
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
19
inconsistent ontology term
1
inconsistent replicate
organ_slims!
vasculature
BIOSAMPLE
ASSAY
21 results
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ATAC-seq
cell line
EndoC_BH1
19
GM12878
1
HepG2
1
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