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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
857
ChIP-seq
243
total RNA-seq
128
single cell RNA-seq
61
ATAC-seq
27
snATAC-seq
17
WGBS
12
DNase-seq
5
GRO-seq
4
RRBS
2
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
61
DNA accessibility
Date released
18
May, 2022
14
September, 2018
8
October, 2017
7
August, 2020
5
August, 2017
5
January, 2018
5
September, 2017
3
September, 2020
1
March, 2019
Available data
278
bed narrowPeak
175
bam
141
bigWig
66
fastq
64
xls
39
zippedFastqFolder
27
bigBed narrowPeak
14
tsv
12
bed bed3
7
bed bedgraph
4
bed bed3+
3
txt
2
bed broadPeak
Organism
66
Homo sapiens
Biosample type
32
primary cell
29
tissue
4
in vitro differentiated cells
1
stem cell
Organ
56
pancreas
32
epithelium
2
adipose tissue
2
connective tissue
1
brain
1
embryo
1
liver
1
spleen
Project
56
AMP
10
HPAP
Genome assembly (visualization)
49
hg19
42
GRCh38
5
hg18
Lab
36
AMP-T2D consortium
18
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
BIOSAMPLE
ASSAY
66 results
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ATAC-seq
GRO-seq
primary cell
pancreatic alpha cell
13
pancreatic beta cell
10
pancreatic acinar cell
5
pancreatic ductal cell
4
tissue
islet of Langerhans
20
body of pancreas
4
cerebellum (Hemisphere)
1
omental fat pad
1
right lobe of liver
1
+ See 2 more…
in vitro differentiated cells
Posterior foregut
1
definitive endodermal cell
1
pancreatic endoderm
1
primitive gut cell
1
stem cell
hESC
1
See all biosamples
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