Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
233
total RNA-seq
172
ChIP-seq
152
single cell RNA-seq
139
ATAC-seq
82
snATAC-seq
17
pCHi-C
5
Hi-C
5
STARR-seq
4
MeRIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
139
DNA accessibility
Date released
66
August, 2021
38
May, 2022
14
February, 2023
11
May, 2023
5
May, 2021
4
March, 2019
1
October, 2017
Available data
106
bed narrowPeak
64
xls
31
bigWig
20
fastq
19
bam
3
bed bedgraph
3
txt
2
bed broadPeak
Organism
139
Homo sapiens
Biosample type
129
tissue
10
in vitro differentiated cells
Organ
83
pancreas
75
kidney
epithelium
20
liver
2
connective tissue
Project
128
AMP
11
T1D
Genome assembly (visualization)
78
GRCh38
51
hg19
Lab
AMP-T2D consortium
75
Katalin Susztak, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
lab.title!
AMP-T2D consortium
organ_slims!
epithelium
BIOSAMPLE
ASSAY
139 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
34
liver
20
in vitro differentiated cells
embryonic stem cell
6
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
neuron cell of Hypothalamus (neuron)
1
osteoblast
1
Download