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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1677
ChIP-seq
1418
total RNA-seq
497
ATAC-seq
363
single cell RNA-seq
212
DNase-seq
87
RNA microarray
75
WGBS
66
snATAC-seq
40
pCHi-C
34
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
snDrop-seq
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
497
DNA accessibility
Date released
106
February, 2021
100
May, 2020
92
February, 2023
77
August, 2021
59
May, 2022
29
May, 2021
26
November, 2019
22
October, 2019
14
September, 2018
11
May, 2023
8
October, 2017
7
August, 2020
6
July, 2019
5
August, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
2
December, 2019
1
November, 2020
Available data
260
bed narrowPeak
157
bam
131
bigWig
87
txt
64
xls
43
fastq
39
zippedFastqFolder
27
bigBed narrowPeak
16
tsv
12
bed bed3
7
bed bedgraph
4
bed bed3+
2
bed broadPeak
Organism
583
Homo sapiens
Biosample type
318
tissue
200
primary cell
37
in vitro differentiated cells
29
cell line
Organ
123
pancreas
104
epithelium
96
bone element
77
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
26
connective tissue
23
liver
12
skeleton
8
limb
7
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
535
AMP
49
HPAP
Genome assembly (visualization)
238
hg19
234
GRCh38
Lab
430
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
126
inconsistent ontology term
2
audit script error
1
inconsistent replicate
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
584 results
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Clear Filters
ATAC-seq
RNA microarray
tissue
bone element
84
kidney
75
islet of Langerhans
39
coronary artery
36
liver
20
+ See 32 more…
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
+ See 34 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
+ See 7 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
See all biosamples
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