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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1659
ChIP-seq
1247
total RNA-seq
343
ATAC-seq
212
DNase-seq
211
single cell RNA-seq
87
RNA microarray
40
pCHi-C
28
WGBS
26
Hi-C
21
RRBS
18
small RNA-seq
5
FAIRE-seq
5
GRO-seq
3
snDrop-seq
2
Capture-C
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
Assay category
343
DNA accessibility
Date released
106
February, 2021
100
May, 2020
89
February, 2023
29
May, 2021
26
November, 2019
22
October, 2019
14
September, 2018
11
August, 2021
7
October, 2017
6
July, 2019
5
August, 2017
5
September, 2017
4
March, 2020
3
January, 2018
2
December, 2019
1
November, 2020
Available data
172
bed narrowPeak
156
bam
95
bigWig
84
txt
31
fastq
27
bigBed narrowPeak
16
tsv
12
bed bed3
4
bed bed3+
4
bed bedgraph
Organism
429
Homo sapiens
Biosample type
218
tissue
151
primary cell
32
in vitro differentiated cells
29
cell line
Organ
96
bone element
69
pancreas
55
epithelium
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
24
connective tissue
12
skeleton
8
limb
7
adipose tissue
4
brain
3
liver
2
kidney
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
430
AMP
Genome assembly (visualization)
210
hg19
146
GRCh38
Lab
430
AMP-T2D consortium
75
Katalin Susztak, Upenn
49
Klaus Kaestner, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
125
inconsistent ontology term
2
audit script error
1
inconsistent replicate
BIOSAMPLE
ASSAY
430 results
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Clear Filters
ATAC-seq
RNA microarray
tissue
bone element
84
coronary artery
36
islet of Langerhans
34
retina
15
pigmented layer of retina
12
+ See 30 more…
primary cell
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
monocyte
15
macrophage
11
pancreatic beta cell
7
+ See 34 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
7
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
immature adipocyte
2
+ See 3 more…
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
GM12878
1
HepG2
1
See all biosamples
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