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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
948
total RNA-seq
731
ChIP-seq
258
ATAC-seq
176
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
18
WGBS
16
Hi-C
16
small RNA-seq
6
RRBS
4
MeRIP-seq
3
FAIRE-seq
3
snDrop-seq
Assay category
258
DNA accessibility
Date released
79
February, 2023
64
August, 2021
38
May, 2022
20
November, 2019
16
October, 2019
11
May, 2023
8
February, 2021
8
October, 2017
6
July, 2019
4
March, 2019
August, 2017
2
January, 2018
2
March, 2020
Available data
206
bed narrowPeak
64
xls
62
bam
41
bigWig
27
fastq
5
bed bed3
2
bed broadPeak
1
bigBed narrowPeak
1
tsv
Organism
258
Homo sapiens
Biosample type
258
tissue
197
primary cell
37
in vitro differentiated cells
29
cell line
Organ
75
kidney
62
pancreas
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
20
liver
12
bone element
12
epithelium
12
skeleton
8
limb
5
adipose tissue
5
connective tissue
4
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
247
AMP
11
T1D
Genome assembly (visualization)
156
GRCh38
120
hg19
Lab
129
AMP-T2D consortium
75
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
August, 2017
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
258 results
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ATAC-seq
tissue
kidney
75
islet of Langerhans
68
coronary artery
36
liver
20
retina
15
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