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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
103
ChIP-seq
78
total RNA-seq
70
single cell RNA-seq
51
ATAC-seq
19
DNase-seq
6
RRBS
5
Hi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
51
DNA accessibility
Date released
16
May, 2021
14
September, 2018
12
February, 2023
5
September, 2017
August, 2017
2
March, 2020
1
November, 2019
1
October, 2019
Available data
33
bed narrowPeak
21
bam
21
bigWig
19
bigBed narrowPeak
19
fastq
1
tsv
Organism
51
Homo sapiens
Biosample type
20
primary cell
19
cell line
12
tissue
Organ
66
pancreas
51
epithelium
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
22
connective tissue
12
bone element
12
skeleton
8
limb
5
adipose tissue
4
brain
2
liver
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
51
AMP
Genome assembly (visualization)
35
hg19
21
GRCh38
Lab
51
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
20
inconsistent ontology term
month_released!
August, 2017
BIOSAMPLE
ASSAY
51 results
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ATAC-seq
primary cell
pancreatic beta cell
6
pancreatic alpha cell
5
pancreatic acinar cell
4
pancreatic ductal cell
4
Liver fetal (hepatocyte)
1
cell line
EndoC_BH1
19
tissue
pigmented layer of retina
12
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