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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1006
total RNA-seq
867
ChIP-seq
254
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
25
pCHi-C
15
WGBS
12
Hi-C
5
RRBS
4
MeRIP-seq
3
snDrop-seq
2
FAIRE-seq
Assay category
254
DNA accessibility
Date released
79
February, 2023
64
August, 2021
38
May, 2022
20
November, 2019
16
October, 2019
11
May, 2023
8
February, 2021
8
October, 2017
July, 2019
4
March, 2019
2
August, 2017
2
January, 2018
2
March, 2020
Available data
203
bed narrowPeak
64
xls
58
bam
37
bigWig
29
fastq
5
bed bed3
3
bigBed narrowPeak
2
bed broadPeak
1
tsv
Organism
254
Homo sapiens
Biosample type
254
tissue
200
primary cell
42
in vitro differentiated cells
29
cell line
Organ
75
kidney
62
pancreas
36
artery
36
blood vessel
36
vasculature
35
heart
28
eye
21
liver
12
bone element
12
epithelium
12
skeleton
8
limb
6
adipose tissue
6
connective tissue
3
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
243
AMP
11
T1D
Genome assembly (visualization)
152
GRCh38
117
hg19
Lab
125
AMP-T2D consortium
75
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
July, 2019
BIOSAMPLE
ASSAY
254 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
68
coronary artery
35
liver
20
retina
15
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