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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
852
ChIP-seq
252
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
252
DNA accessibility
Date released
79
February, 2023
64
August, 2021
38
May, 2022
20
November, 2019
16
October, 2019
11
May, 2023
8
February, 2021
October, 2017
6
July, 2019
4
March, 2019
2
August, 2017
2
January, 2018
2
March, 2020
Available data
202
bed narrowPeak
64
xls
57
bam
35
bigWig
21
fastq
5
bed bed3
3
bigBed narrowPeak
1
bed broadPeak
1
tsv
Organism
252
Homo sapiens
Biosample type
252
tissue
200
primary cell
42
in vitro differentiated cells
29
cell line
Organ
75
kidney
57
pancreas
39
heart
38
blood vessel
38
vasculature
37
artery
28
eye
21
liver
12
bone element
12
epithelium
12
skeleton
8
limb
5
adipose tissue
5
connective tissue
3
brain
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
Project
241
AMP
11
T1D
Genome assembly (visualization)
150
GRCh38
115
hg19
Lab
124
AMP-T2D consortium
75
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
Audit category:
1
inconsistent ontology term
month_released!
October, 2017
BIOSAMPLE
ASSAY
252 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
67
coronary artery
36
liver
20
retina
15
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