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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1015
total RNA-seq
672
ChIP-seq
244
ATAC-seq
174
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
21
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
244
DNA accessibility
Date released
79
February, 2023
64
August, 2021
38
May, 2022
20
November, 2019
October, 2019
11
May, 2023
8
February, 2021
8
October, 2017
6
July, 2019
4
March, 2019
2
August, 2017
2
January, 2018
2
March, 2020
Available data
206
bed narrowPeak
64
xls
62
bam
40
bigWig
29
fastq
5
bed bed3
2
bed broadPeak
2
bigBed narrowPeak
1
tsv
Organism
244
Homo sapiens
Biosample type
244
tissue
198
primary cell
38
in vitro differentiated cells
29
cell line
Organ
75
kidney
59
pancreas
39
heart
37
blood vessel
37
vasculature
36
artery
27
eye
21
liver
12
bone element
12
epithelium
12
skeleton
6
limb
5
adipose tissue
5
connective tissue
3
brain
1
musculature of body
1
spleen
Project
233
AMP
11
T1D
Genome assembly (visualization)
156
GRCh38
119
hg19
Lab
115
AMP-T2D consortium
75
Katalin Susztak, Upenn
29
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
1
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
244 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
55
coronary artery
36
liver
20
retina
15
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