Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
108
total RNA-seq
107
ATAC-seq
32
pCHi-C
10
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
ChIP-seq
2
HiChIP
2
snATAC-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
single cell RNA-seq
Assay category
107
DNA accessibility
Date released
103
February, 2023
100
May, 2020
77
May, 2022
76
August, 2021
34
May, 2021
26
November, 2019
22
February, 2021
22
October, 2019
14
September, 2018
11
May, 2023
8
October, 2017
7
August, 2020
6
July, 2019
5
August, 2017
5
September, 2017
4
March, 2019
4
March, 2020
3
January, 2018
3
September, 2020
1
November, 2020
Available data
65
bed narrowPeak
14
tsv
10
bed bed3
7
bigWig
4
bed bed3+
3
bed bedgraph
3
txt
Organism
107
Homo sapiens
Biosample type
81
tissue
12
in vitro differentiated cells
12
primary cell
2
cell line
Organ
35
artery
35
blood vessel
35
heart
35
vasculature
27
eye
15
pancreas
14
epithelium
10
connective tissue
4
bone element
4
skeleton
1
adipose tissue
1
brain
Project
96
AMP
11
T1D
Genome assembly (visualization)
49
hg19
35
GRCh38
Lab
93
AMP-T2D consortium
11
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
BIOSAMPLE
ASSAY
107 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
tissue
coronary artery
35
retina
15
islet of Langerhans
13
pigmented layer of retina
12
acetabular part of hip bone
1
+ See 5 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
Progenitor cell of Hypothalamus (neural progenitor cell)
1
adipocyte
1
embryonic stem cell
1
+ See 2 more…
primary cell
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
cell line
EndoC_BH1
2
See all biosamples
Download