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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1473
ChIP-seq
1227
total RNA-seq
285
ATAC-seq
176
DNase-seq
170
single cell RNA-seq
87
RNA microarray
39
pCHi-C
28
snATAC-seq
26
WGBS
23
Hi-C
16
small RNA-seq
11
RRBS
10
MeRIP-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
4
FAIRE-seq
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
285
DNA accessibility
Date released
76
August, 2021
56
February, 2023
38
May, 2022
26
November, 2019
21
May, 2021
19
October, 2019
13
February, 2021
11
May, 2023
8
October, 2017
4
July, 2019
4
March, 2019
4
March, 2020
3
January, 2018
2
August, 2017
Available data
193
bed narrowPeak
80
bam
64
xls
55
bigWig
29
fastq
11
bed bed3
7
bed bedgraph
5
bigBed narrowPeak
4
bed bed3+
3
txt
2
bed broadPeak
2
tsv
Organism
285
Homo sapiens
Biosample type
222
tissue
primary cell
42
in vitro differentiated cells
21
cell line
Organ
81
pancreas
75
kidney
47
heart
blood vessel
46
vasculature
45
artery
31
epithelium
28
eye
23
connective tissue
22
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
274
AMP
11
T1D
Genome assembly (visualization)
166
hg19
139
GRCh38
Lab
146
AMP-T2D consortium
75
Katalin Susztak, Upenn
34
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
5
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
30
inconsistent ontology term
1
inconsistent replicate
organ_slims!
blood vessel
biosample_type!
primary cell
BIOSAMPLE
ASSAY
285 results
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Clear Filters
ATAC-seq
tissue
kidney
75
islet of Langerhans
68
liver
20
retina
15
pigmented layer of retina
12
+ See 26 more…
in vitro differentiated cells
neural progenitor cell
10
adipocyte
8
embryonic stem cell
6
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
chondrocyte
5
+ See 7 more…
cell line
EndoC_BH1
19
GM12878
1
HepG2
1
See all biosamples
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