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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
125
ChIP-seq
125
total RNA-seq
87
ATAC-seq
70
single cell RNA-seq
47
WGBS
19
DNase-seq
8
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
87
DNA accessibility
Date released
39
May, 2022
May, 2021
14
September, 2018
12
February, 2023
7
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
2
March, 2020
1
November, 2019
1
October, 2019
Available data
39
zippedFastqFolder
36
bed narrowPeak
34
bigWig
32
fastq
24
bam
22
bigBed narrowPeak
1
tsv
Organism
87
Homo sapiens
Biosample type
72
primary cell
12
tissue
3
cell line
Organ
136
pancreas
87
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
49
HPAP
38
AMP
Genome assembly (visualization)
38
hg19
34
GRCh38
Lab
49
Klaus Kaestner, Upenn
38
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
organ_slims!
nerve
month_released!
May, 2021
BIOSAMPLE
ASSAY
87 results
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ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
Liver fetal (hepatocyte)
1
tissue
pigmented layer of retina
12
cell line
EndoC_BH1
3
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