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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
208
ChIP-seq
191
total RNA-seq
149
ATAC-seq
76
single cell RNA-seq
49
WGBS
24
DNase-seq
9
Hi-C
6
MeRIP-seq
6
RRBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
1
pCHi-C
Assay category
149
DNA accessibility
Date released
47
February, 2023
39
May, 2022
16
May, 2021
14
September, 2018
8
February, 2021
7
August, 2020
5
September, 2017
3
August, 2017
3
September, 2020
2
July, 2019
2
March, 2020
2
October, 2019
1
November, 2019
Available data
82
bed narrowPeak
39
zippedFastqFolder
37
bigWig
35
bam
32
fastq
22
bigBed narrowPeak
1
tsv
Organism
149
Homo sapiens
Biosample type
72
primary cell
50
tissue
27
cell line
Organ
152
pancreas
103
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
100
AMP
49
HPAP
Genome assembly (visualization)
80
GRCh38
49
hg19
Lab
100
AMP-T2D consortium
49
Klaus Kaestner, Upenn
Audit category:
20
inconsistent ontology term
BIOSAMPLE
ASSAY
149 results
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Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell
35
pancreatic beta cell
23
pancreatic acinar cell
9
pancreatic ductal cell
4
Liver fetal (hepatocyte)
1
tissue
coronary artery
36
pigmented layer of retina
12
thoracic aorta
1
tibial artery
1
cell line
EndoC_BH1
19
smooth muscle cell of the coronary artery
8
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