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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
604
ChIP-seq
249
total RNA-seq
98
ATAC-seq
87
DNase-seq
65
single cell RNA-seq
6
RRBS
6
snATAC-seq
5
Hi-C
5
WGBS
5
pCHi-C
4
STARR-seq
4
small RNA-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
whole genome sequencing assay
Assay category
98
DNA accessibility
Date released
64
August, 2021
20
May, 2022
11
May, 2023
1
August, 2017
1
February, 2021
1
October, 2019
Available data
87
bed narrowPeak
64
xls
21
bigWig
3
bam
1
bed bed3
1
bigBed narrowPeak
1
fastq
Organism
98
Homo sapiens
Biosample type
96
tissue
1
cell line
1
primary cell
Organ
152
pancreas
103
epithelium
75
kidney
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
25
connective tissue
23
liver
12
bone element
12
skeleton
8
limb
6
adipose tissue
4
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
1
spleen
Project
98
AMP
Genome assembly (visualization)
78
GRCh38
23
hg19
Lab
75
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
3
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
BIOSAMPLE
ASSAY
98 results
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Clear Filters
ATAC-seq
tissue
kidney
75
liver
20
right lobe of liver
1
cell line
HepG2
1
primary cell
Liver fetal (hepatocyte)
1
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