Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
219
total RNA-seq
96
ATAC-seq
71
ChIP-seq
41
WGBS
11
snATAC-seq
10
MeRIP-seq
9
Hi-C
5
DNase-seq
5
single cell RNA-seq
2
Capture-C
2
RRBS
2
small RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
pCHi-C
Assay category
96
DNA accessibility
Date released
39
May, 2022
20
November, 2019
16
May, 2021
11
February, 2023
4
March, 2020
3
March, 2019
3
October, 2019
Available data
65
bam
64
bed narrowPeak
fastq
41
bigWig
39
zippedFastqFolder
22
bigBed narrowPeak
2
bed broadPeak
2
tsv
Organism
96
Homo sapiens
Biosample type
39
primary cell
38
tissue
19
cell line
Organ
96
pancreas
75
kidney
71
epithelium
47
heart
46
blood vessel
46
vasculature
45
artery
28
eye
23
connective tissue
22
liver
12
bone element
12
skeleton
8
limb
4
adipose tissue
3
brain
1
blood
1
bodily fluid
1
musculature of body
1
nerve
1
pituitary gland
1
skin of body
Project
46
AMP
39
HPAP
11
T1D
Genome assembly (visualization)
26
hg19
22
GRCh38
Lab
43
AMP-T2D consortium
39
Klaus Kaestner, Upenn
11
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
19
inconsistent ontology term
files.file_type!
fastq
BIOSAMPLE
ASSAY
96 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
primary cell
pancreatic alpha cell
22
pancreatic beta cell
13
pancreatic acinar cell
4
tissue
islet of Langerhans
38
cell line
EndoC_BH1
19
Download