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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
242
ChIP-seq
30
total RNA-seq
22
ATAC-seq
10
DNase-seq
6
Hi-C
4
pCHi-C
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
FAIRE-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
6
3D chromatin structure
1
Transcription
Date released
10
March, 2020
8
July, 2019
5
October, 2019
3
August, 2021
3
October, 2022
2
March, 2023
2
November, 2019
1
December, 2018
1
March, 2019
Available data
5
hic
3
bedpe bed3+
1
bed bed3+
1
bigWig
1
hdf5
Organism
6
Homo sapiens
Biosample type
2
in vitro differentiated cells
2
primary cell
1
cell line
1
stem cell
1
tissue
Organ
1
blood vessel
1
epithelium
1
heart
1
pancreas
1
vasculature
1
vein
Project
5
AMP
1
ITG
1
community
Genome assembly (visualization)
5
hg19
2
GRCh38
Lab
5
AMP-T2D consortium
1
Anna Gloyn, Oxford
1
ITG
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
BIOSAMPLE
ASSAY
7 results
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Hi-C
CRISPR RNA-seq
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
primary cell
chondrocytes
1
endothelial cell of umbilical vein
1
cell line
Panc1
1
stem cell
SB Ad3.1
1
tissue
heart
1
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